Gm35546 Gene Detail

Summary

• Symbol
  Gm35546
• Name
  predicted gene, 35546

• Feature Type
  lncRNA gene
• IDs
  MGI:5594705
  NCBI Gene: 102639175
• Alliance
  gene page
• Transcription Start Sites
  6 TSS

Location &
Maps

• Sequence Map
  Chr1:186319519-186346706 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  630 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5594705	lncRNA gene	Chr1:186319519-186393410 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm35546
  

Sequences &
Gene Models

• All Sequences
  13
• RefSeq
  3

• Ensembl
  ENSMUSG00000119954 (Evidence)
• NCBI Gene
  102639175

Representative Sequences			Length	Strain/Species
genomic	102639175	NCBI Gene Model | MGI Sequence Detail	27188	C57BL/6J
transcript	NR_168305	RefSeq | MGI Sequence Detail	1780	ZRU/MplStud

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm35546:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr10625	Chr1:186319492-186319507 (+)	-19 bp
Tssr10626	Chr1:186319512-186319547 (+)	11 bp
Tssr10627	Chr1:186319559-186319569 (+)	45 bp
Tssr10628	Chr1:186319601-186319610 (+)	87 bp
Tssr10629	Chr1:186319676-186319689 (+)	164 bp
Tssr10630	Chr1:186319700-186319712 (+)	187 bp