Gm35986 Gene Detail

Summary

• Symbol
  Gm35986
• Name
  predicted gene, 35986

• Feature Type
  lncRNA gene
• IDs
  MGI:5595145
  NCBI Gene: 102639747
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr3:129321116-129326037 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  156 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5595145	lncRNA gene	Chr3:129321104-129326037 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0003835	antisense lncRNA gene	Chr3:132188140-132193044 (-)
A/J	MGP_AJ_G0003815	antisense lncRNA gene	Chr3:127596882-127606209 (-)
AKR/J	MGP_AKRJ_G0003792	antisense lncRNA gene	Chr3:130907766-130912670 (-)
BALB/cJ	MGP_BALBcJ_G0003802	antisense lncRNA gene	Chr3:127438542-127443729 (-)
C3H/HeJ	MGP_C3HHeJ_G0003749	antisense lncRNA gene	Chr3:131296001-131301836 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0003945	antisense lncRNA gene	Chr3:136924486-136930384 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0003714	antisense lncRNA gene	Chr3:130962662-130969210 (-)
CBA/J	MGP_CBAJ_G0003743	antisense lncRNA gene	Chr3:141548745-141553698 (-)
DBA/2J	MGP_DBA2J_G0003756	antisense lncRNA gene	Chr3:126790586-126795491 (-)
FVB/NJ	MGP_FVBNJ_G0003777	antisense lncRNA gene	Chr3:124367047-124371952 (-)
LP/J	MGP_LPJ_G0003837	antisense lncRNA gene	Chr3:133703905-133708847 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003764	antisense lncRNA gene	Chr3:149493935-149498886 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003946	antisense lncRNA gene	Chr3:130569579-130574452 (-)
PWK/PhJ	MGP_PWKPhJ_G0003669	antisense lncRNA gene	Chr3:126519417-126524841 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0003614	antisense lncRNA gene	Chr3:128631811-128636740 (-)
WSB/EiJ	MGP_WSBEiJ_G0003750	antisense lncRNA gene	Chr3:131278640-131283623 (-)

Homology

• Gene Tree
  Gm35986
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  7 phenotype references
  

• All Mutations and Alleles
  40
• Chemically induced (other)
  1
• Gene trapped
  38
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm35986
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  28
• RefSeq
  2

• Ensembl
  ENSMUSG00000105837 (Evidence)
• NCBI Gene
  102639747

Representative Sequences			Length	Strain/Species
genomic	102639747	NCBI Gene Model | MGI Sequence Detail	4922	C57BL/6J
transcript	NR_153368	RefSeq | MGI Sequence Detail	586	ZRU/MplStud

Molecular
Reagents

• All nucleic 2

  cDNA 2

References

• Summaries
  All 11

  Diseases 1

  Phenotypes 7
• Earliest
  J:70677 Cook SA, et al., Mouse paracentric inversion In(3)55Rk mutates the urate oxidase gene. Cytogenet Cell Genet. 2001;93(1-2):77-82
• Latest
  J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426

TSS for Gm35986:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr35616	Chr3:129325645-129325648 (-)	390 bp