Gm36084 Gene Detail

Summary

• Symbol
  Gm36084
• Name
  predicted gene, 36084

• Feature Type
  lncRNA gene
• IDs
  MGI:5595243
  NCBI Gene: 102639875
• Alliance
  gene page
• Transcription Start Sites
  7 TSS

Location &
Maps

• Sequence Map
  Chr5:90860787-90876723 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  538 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5595243	lncRNA gene	Chr5:90852926-90878514 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm36084
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  2
• Radiation induced
  1
• Spontaneous
  1
• Genomic Mutations
  4 involving Gm36084
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  8
• RefSeq
  3

• Ensembl
  ENSMUSG00000141359 (Evidence)
• NCBI Gene
  102639875

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000141359	Ensembl Gene Model | MGI Sequence Detail	15937	C57BL/6J
transcript	ENSMUST00000364779	Ensembl | MGI Sequence Detail	1279	Not Applicable

References

• Summaries
  All 9

  Phenotypes 6
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17

TSS for Gm36084:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr47169	Chr5:90866975-90867021 (+)	6,211 bp
Tssr47170	Chr5:90867026-90867063 (+)	6,258 bp
Tssr47171	Chr5:90867077-90867084 (+)	6,294 bp
Tssr47172	Chr5:90870233-90870239 (+)	9,449 bp
Tssr47173	Chr5:90871327-90871345 (+)	10,549 bp
Tssr47174	Chr5:90871365-90871378 (+)	10,585 bp
Tssr47175	Chr5:90871425-90871444 (+)	10,648 bp