Gm36266 Gene Detail

Summary

• Symbol
  Gm36266
• Name
  predicted gene, 36266

• Feature Type
  lncRNA gene
• IDs
  MGI:5595425
  NCBI Gene: 108169076
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr5:137611114-137613509 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  162 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5595425	lncRNA gene	Chr5:137610968-137613509 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0004205	antisense lncRNA gene	Chr5:142389074-142391471 (+)
A/J	MGP_AJ_G0004184	antisense lncRNA gene	Chr5:136177783-136180180 (+)
AKR/J	MGP_AKRJ_G0004165	antisense lncRNA gene	Chr5:140607675-140610088 (+)
BALB/cJ	MGP_BALBcJ_G0004170	antisense lncRNA gene	Chr5:137546135-137548532 (+)
C3H/HeJ	MGP_C3HHeJ_G0004118	antisense lncRNA gene	Chr5:141257839-141260219 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0004318	antisense lncRNA gene	Chr5:147645151-147647534 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003794	antisense lncRNA gene	Chr5:130420745-130423073 (+)
CAST/EiJ	MGP_CASTEiJ_G0004080	antisense lncRNA gene	Chr5:140659974-140662367 (+)
CBA/J	MGP_CBAJ_G0004112	antisense lncRNA gene	Chr5:153521864-153524261 (+)
DBA/2J	MGP_DBA2J_G0004128	antisense lncRNA gene	Chr5:136079111-136081508 (+)
FVB/NJ	MGP_FVBNJ_G0004144	antisense lncRNA gene	Chr5:135286937-135289324 (+)
LP/J	MGP_LPJ_G0004206	antisense lncRNA gene	Chr5:142859991-142862388 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004134	antisense lncRNA gene	Chr5:156340234-156342631 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004316	antisense lncRNA gene	Chr5:140457302-140459717 (+)
PWK/PhJ	MGP_PWKPhJ_G0004034	antisense lncRNA gene	Chr5:135170119-135172512 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0003978	antisense lncRNA gene	Chr5:138017929-138020274 (+)
WSB/EiJ	MGP_WSBEiJ_G0004116	antisense lncRNA gene	Chr5:141188224-141190629 (+)

Homology

• Gene Tree
  Gm36266
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  9
• Gene trapped
  9
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000106617 (Evidence)
• NCBI Gene
  108169076

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000106617	Ensembl Gene Model | MGI Sequence Detail	2396	C57BL/6J
transcript	ENSMUST00000196660	Ensembl | MGI Sequence Detail	1749	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 6

  Phenotypes 2
• Earliest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9