Gm36401 Gene Detail

Summary

• Symbol
  Gm36401
• Name
  predicted gene, 36401

• Feature Type
  lncRNA gene
• IDs
  MGI:5595560
  NCBI Gene: 102640298
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr5:45860075-45862102 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  104 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5595560	lncRNA gene	Chr5:45860075-45862102 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0001484	unclassified gene	Chr5:44416527-44418590 (+)
A/J	MGP_AJ_G0001466	unclassified gene	Chr5:42879918-42881947 (+)
AKR/J	MGP_AKRJ_G0001452	unclassified gene	Chr5:44357165-44359195 (+)
BALB/cJ	MGP_BALBcJ_G0001462	unclassified gene	Chr5:43349386-43351415 (+)
C3H/HeJ	MGP_C3HHeJ_G0001439	unclassified gene	Chr5:44375410-44377439 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0001579	unclassified gene	Chr5:46503963-46505990 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0001272	unclassified gene	Chr5:40031166-40033103 (+)
CAST/EiJ	no annotation
CBA/J	MGP_CBAJ_G0001430	unclassified gene	Chr5:47790072-47792101 (+)
DBA/2J	MGP_DBA2J_G0001435	unclassified gene	Chr5:42945790-42947819 (+)
FVB/NJ	MGP_FVBNJ_G0001443	unclassified gene	Chr5:42375130-42377159 (+)
LP/J	MGP_LPJ_G0001489	unclassified gene	Chr5:44908644-44910671 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0001429	unclassified gene	Chr5:48533615-48537262 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0001567	unclassified gene	Chr5:43889273-43891302 (+)
PWK/PhJ	MGP_PWKPhJ_G0001371	unclassified gene	Chr5:42075381-42077470 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0001341	unclassified gene	Chr5:43342905-43344969 (+)
WSB/EiJ	MGP_WSBEiJ_G0001432	unclassified gene	Chr5:43946837-43948866 (+)

Homology

• Gene Tree
  Gm36401
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  17 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  2
• Radiation induced
  1
• Spontaneous
  1
• Genomic Mutations
  4 involving Gm36401
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19

• Ensembl
  ENSMUSG00000104342 (Evidence)
• NCBI Gene
  102640298

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000104342	Ensembl Gene Model | MGI Sequence Detail	2028	C57BL/6J
transcript	AK076240	GenBank | ENA | DDBJ | MGI Sequence Detail	2028	C57BL/6J

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 21

  Phenotypes 17
• Earliest
  J:5021 Batchelor AL, et al., A comparison of the mutagenic effectiveness of chronic neutron- and gamma-irradiation of mouse spermatogonia. Mutat Res. 1966 Jun;3(3):218-29
• Latest
  J:125425 Howell GR, et al., Mutation of a ubiquitously expressed mouse transmembrane protein (Tapt1) causes specific skeletal homeotic transformations. Genetics. 2007 Feb;175(2):699-707