Gm36406 Gene Detail

Summary

• Symbol
  Gm36406
• Name
  predicted gene, 36406
• Synonyms
  Gm43996

• Feature Type
  lncRNA gene
• IDs
  MGI:5595565
  NCBI Gene: 102640305
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr6:16457389-16469949 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  435 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5595565	lncRNA gene	Chr6:16454380-16469949 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0015625	unclassified non-coding RNA gene	Chr6:13634263-13646898 (-)
A/J	MGP_AJ_G0015601	unclassified non-coding RNA gene	Chr6:13095916-13108569 (-)
AKR/J	MGP_AKRJ_G0015564	unclassified non-coding RNA gene	Chr6:13572338-13584891 (-)
BALB/cJ	MGP_BALBcJ_G0015563	unclassified non-coding RNA gene	Chr6:13175308-13188012 (-)
C3H/HeJ	MGP_C3HHeJ_G0015385	unclassified non-coding RNA gene	Chr6:13434359-13446976 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0016016	unclassified non-coding RNA gene	Chr6:14104911-14121253 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013750	unclassified non-coding RNA gene	Chr6:12104258-12117920 (-)
CAST/EiJ	MGP_CASTEiJ_G0014941	unclassified non-coding RNA gene	Chr6:13324404-13342698 (-)
CBA/J	MGP_CBAJ_G0015366	unclassified non-coding RNA gene	Chr6:14518375-14530593 (-)
DBA/2J	MGP_DBA2J_G0015460	unclassified non-coding RNA gene	Chr6:13038997-13052896 (-)
FVB/NJ	MGP_FVBNJ_G0015467	unclassified non-coding RNA gene	Chr6:12883945-12896405 (-)
LP/J	MGP_LPJ_G0015541	unclassified non-coding RNA gene	Chr6:13727302-13743410 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015490	unclassified non-coding RNA gene	Chr6:15644351-15645772 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0016059	unclassified non-coding RNA gene	Chr6:13446247-13461668 (-)
PWK/PhJ	MGP_PWKPhJ_G0014725	unclassified non-coding RNA gene	Chr6:12681813-12694921 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0014514	unclassified non-coding RNA gene	Chr6:13265946-13284880 (-)
WSB/EiJ	MGP_WSBEiJ_G0015045	unclassified non-coding RNA gene	Chr6:13375474-13390244 (-)

Homology

• Gene Tree
  Gm36406
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  2

• Ensembl
  ENSMUSG00000108295 (Evidence)
• NCBI Gene
  102640305

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000108295	Ensembl Gene Model | MGI Sequence Detail	12561	C57BL/6J
transcript	ENSMUST00000203052	Ensembl | MGI Sequence Detail	608	Not Applicable

Other
Accession IDs

MGI:5690388

References

• Summaries
  All 4
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm36406:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr59885	Chr6:16469891-16469907 (-)	50 bp