Gm36417 Gene Detail

Summary

• Symbol
  Gm36417
• Name
  predicted gene, 36417

• Feature Type
  lncRNA gene
• IDs
  MGI:5595576
  NCBI Gene: 102640320
• Alliance
  gene page
• Transcription Start Sites
  5 TSS

Location &
Maps

• Sequence Map
  Chr2:172903510-172907375 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  270 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5595576	lncRNA gene	Chr2:172903510-172907375 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Sequences &
Gene Models

• All Sequences
  3
• RefSeq
  1

• NCBI Gene
  102640320

Representative Sequences			Length	Strain/Species
genomic	102640320	NCBI Gene Model | MGI Sequence Detail	3866	C57BL/6J
transcript	XR_375357	RefSeq | MGI Sequence Detail	1584	C57BL/6J

References

• Summaries
  All 2
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:90438 Mouse Genome Informatics Scientific Curators, Obtaining and loading genome assembly coordinates from NCBI annotations. 2005;

TSS for Gm36417:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr21999	Chr2:172903488-172903523 (+)	-4 bp
Tssr22000	Chr2:172903538-172903549 (+)	34 bp
Tssr22001	Chr2:172904071-172904082 (+)	567 bp
Tssr22002	Chr2:172905332-172905339 (+)	1,826 bp
Tssr22003	Chr2:172907095-172907100 (+)	3,588 bp