Gm36459 Gene Detail

Summary

• Symbol
  Gm36459
• Name
  predicted gene, 36459

• Feature Type
  lncRNA gene
• IDs
  MGI:5595618
  NCBI Gene: 102640389
• Alliance
  gene page
• Transcription Start Sites
  5 TSS

Location &
Maps

• Sequence Map
  Chr9:64701734-64718408 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  461 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5595618	lncRNA gene	Chr9:64701734-64729286 (-)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm36459
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm36459
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  10
• RefSeq
  3

• Ensembl
  ENSMUSG00000120030 (Evidence)
• NCBI Gene
  102640389

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120030	Ensembl Gene Model | MGI Sequence Detail	16675	C57BL/6J
transcript	ENSMUST00000242820	Ensembl | MGI Sequence Detail	556	Not Applicable

References

• Summaries
  All 5

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm36459:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr90161	Chr9:64718372-64718389 (-)	27 bp
Tssr90160	Chr9:64718317-64718331 (-)	84 bp
Tssr90159	Chr9:64718177-64718188 (-)	225 bp
Tssr90158	Chr9:64710720-64710756 (-)	7,670 bp
Tssr2910	Chr9:64703659-64703668 (-)	14,744 bp