Gm36496 Gene Detail

Summary

• Symbol
  Gm36496
• Name
  predicted gene, 36496

• Feature Type
  lncRNA gene
• IDs
  MGI:5595655
  NCBI Gene: 102640433
• Alliance
  gene page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr12:25237501-25239096 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  140 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5595655	lncRNA gene	Chr12:25237501-25240220 (-)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm36496
  

Sequences &
Gene Models

• All Sequences
  6
• RefSeq
  2

• Ensembl
  ENSMUSG00000120697 (Evidence)
• NCBI Gene
  102640433

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120697	Ensembl Gene Model | MGI Sequence Detail	1596	C57BL/6J
transcript	ENSMUST00000245281	Ensembl | MGI Sequence Detail	1284	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm36496:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr115891	Chr12:25239660-25239672 (-)	-570 bp
Tssr115890	Chr12:25239601-25239613 (-)	-511 bp
Tssr115889	Chr12:25239579-25239596 (-)	-492 bp
Tssr115888	Chr12:25239094-25239100 (-)	-1 bp