Gm36535 Gene Detail

Summary

• Symbol
  Gm36535
• Name
  predicted gene, 36535
• Synonyms
  Gm42487

• Feature Type
  lncRNA gene
• IDs
  MGI:5595694
  NCBI Gene: 102640487
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr5:111941210-111954084 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  426 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5595694	lncRNA gene	Chr5:111939421-111957779 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0006755	lincRNA gene	Chr5:114324116-114342690 (+)
A/J	MGP_AJ_G0006749	lincRNA gene	Chr5:109884823-109899080 (+)
AKR/J	MGP_AKRJ_G0006719	lincRNA gene	Chr5:113375144-113389300 (+)
BALB/cJ	MGP_BALBcJ_G0006725	lincRNA gene	Chr5:111257460-111271902 (+)
C3H/HeJ	MGP_C3HHeJ_G0006670	lincRNA gene	Chr5:113809165-113823219 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0006890	lincRNA gene	Chr5:118803471-118817601 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006146	lincRNA gene	Chr5:104720043-104733935 (+)
CAST/EiJ	MGP_CASTEiJ_G0006593	lincRNA gene	Chr5:112706927-112723229 (+)
CBA/J	MGP_CBAJ_G0006652	lincRNA gene	Chr5:123249660-123265127 (+)
DBA/2J	MGP_DBA2J_G0006672	lincRNA gene	Chr5:109961369-109975511 (+)
FVB/NJ	MGP_FVBNJ_G0006696	lincRNA gene	Chr5:108669558-108684393 (+)
LP/J	MGP_LPJ_G0006756	lincRNA gene	Chr5:114891119-114905239 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0006680	lincRNA gene	Chr5:127851760-127865704 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0006892	lincRNA gene	Chr5:112811818-112825948 (+)
PWK/PhJ	MGP_PWKPhJ_G0006532	lincRNA gene	Chr5:108555592-108570158 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0006438	lincRNA gene	Chr5:110283625-110298813 (+)
WSB/EiJ	MGP_WSBEiJ_G0006644	lincRNA gene	Chr5:113312539-113330483 (+)

Homology

• Gene Tree
  Gm36535
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm36535
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  35
• RefSeq
  3

• Ensembl
  ENSMUSG00000105376 (Evidence)
• NCBI Gene
  102640487

Representative Sequences			Length	Strain/Species
genomic	102640487	NCBI Gene Model | MGI Sequence Detail	12875	C57BL/6J
transcript	XR_004942769	RefSeq | MGI Sequence Detail	5675	C57BL/6J

Other
Accession IDs

MGI:5662624

References

• Summaries
  All 10

  Phenotypes 5
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17

TSS for Gm36535:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr47948	Chr5:111941227-111941270 (+)	39 bp