Gm36548 Gene Detail

Summary

• Symbol
  Gm36548
• Name
  predicted gene, 36548
• Synonyms
  Gm42426

• Feature Type
  lncRNA gene
• IDs
  MGI:5595707
  NCBI Gene: 102640506
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr5:3320319-3334584 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  496 from dbSNP Build 142
• Strain Annotations
  7

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5595707	lncRNA gene	Chr5:3320313-3347966 (+)
129S1/SvImJ	no annotation
A/J	MGP_AJ_G0005404	lincRNA gene	Chr13:84734-85392 (+)
AKR/J	MGP_AKRJ_G0005300	lincRNA gene	Chr12:43058-51065 (+)
BALB/cJ	no annotation
C3H/HeJ	MGP_C3HHeJ_G0006488	lincRNA gene	Chr5:49301-119103 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0006704	lincRNA gene	Chr5:246082-246727 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	MGP_CBAJ_G0006471	lincRNA gene	Chr5:106448-125211 (+)
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	MGP_NZOHlLtJ_G0005541	lincRNA gene	Chr13:23490-24099 (+)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm36548
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  13
• RefSeq
  2

• Ensembl
  ENSMUSG00000106658 (Evidence)
• NCBI Gene
  102640506

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000106658	Ensembl Gene Model | MGI Sequence Detail	14266	C57BL/6J
transcript	ENSMUST00000197473	Ensembl | MGI Sequence Detail	685	Not Applicable

Other
Accession IDs

MGI:5662563

References

• Summaries
  All 5
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm36548:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr45033	Chr5:3320374-3320385 (+)	61 bp