Gm36667 Gene Detail

Summary

• Symbol
  Gm36667
• Name
  predicted gene, 36667
• Synonyms
  Gm42624

• Feature Type
  lncRNA gene
• IDs
  MGI:5595826
  NCBI Gene: 102640653
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr5:133563429-133627245 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1794 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5595826	lncRNA gene	Chr5:133563363-133627265 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0006829	lincRNA gene	Chr5:137860572-137919854 (-)
A/J	MGP_AJ_G0006823	lincRNA gene	Chr5:132022747-132081297 (-)
AKR/J	MGP_AKRJ_G0006793	lincRNA gene	Chr5:136286868-136343886 (-)
BALB/cJ	MGP_BALBcJ_G0006799	lincRNA gene	Chr5:133361299-133419918 (-)
C3H/HeJ	MGP_C3HHeJ_G0006744	lincRNA gene	Chr5:136831903-136889722 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0006963	lincRNA gene	Chr5:143070970-143143583 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0006666	lincRNA gene	Chr5:136263633-136320214 (-)
CBA/J	MGP_CBAJ_G0006726	lincRNA gene	Chr5:148626230-148692341 (-)
DBA/2J	MGP_DBA2J_G0006746	lincRNA gene	Chr5:131939540-132001648 (-)
FVB/NJ	MGP_FVBNJ_G0006770	lincRNA gene	Chr5:131055966-131114651 (-)
LP/J	MGP_LPJ_G0006830	lincRNA gene	Chr5:138360732-138417761 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0006753	lincRNA gene	Chr5:151795072-151856795 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0006966	lincRNA gene	Chr5:136016495-136079296 (-)
PWK/PhJ	MGP_PWKPhJ_G0006606	lincRNA gene	Chr5:130934089-130991534 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0006512	lincRNA gene	Chr5:133595276-133657831 (-)
WSB/EiJ	MGP_WSBEiJ_G0006717	lincRNA gene	Chr5:136747362-136809794 (-)

Homology

• Gene Tree
  Gm36667
  

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  2

• Ensembl
  ENSMUSG00000105227 (Evidence)
• NCBI Gene
  102640653

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000105227	Ensembl Gene Model | MGI Sequence Detail	63817	C57BL/6J
transcript	ENSMUST00000196125	Ensembl | MGI Sequence Detail	753	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

Other
Accession IDs

MGI:5662761

References

• Summaries
  All 6
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm36667:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr53601	Chr5:133627236-133627243 (-)	5 bp