Gm36858 Pseudogene Detail

Summary

• Symbol
  Gm36858
• Name
  predicted gene, 36858

• Feature Type
  pseudogene
• IDs
  MGI:5596017
  NCBI Gene: 102640904
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr18:37113110-37122628 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  207 from dbSNP Build 142
• Strain Annotations
  5

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5596017	pseudogene	Chr18:37109347-37123325 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	MGP_C57BL6NJ_G0040777	pseudogene	Chr18:36651121-36660659 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0038915	pseudogene	Chr18:35178848-35181238 (+)
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	MGP_LPJ_G0040032	pseudogene	Chr18:35457835-35485088 (+)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	MGP_NZOHlLtJ_G0040873	pseudogene	Chr18:34984393-34993922 (+)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm36858
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  2
• Endonuclease-mediated
  1
• Targeted
  1
• Genomic Mutations
  2 involving Gm36858
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  8

• Ensembl
  ENSMUSG00000104240 (Evidence)
• NCBI Gene
  102640904

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000104240	Ensembl Gene Model | MGI Sequence Detail	9519	C57BL/6J
transcript	ENSMUST00000194501	Ensembl | MGI Sequence Detail	2391	Not Applicable

References

• Summaries
  All 5

  Phenotypes 2
• Earliest
  J:244163 Hasegawa S, et al., Distinct and Cooperative Functions for the Protocadherin-alpha, -beta and -gamma Clusters in Neuronal Survival and Axon Targeting. Front Mol Neurosci. 2016;9:155
• Latest
  J:313451 Xu L, et al., Abnormal neocortex arealization and Sotos-like syndrome-associated behavior in Setd2 mutant mice. Sci Adv. 2021 Jan;7(1)