Gm36876 Gene Detail

Summary

• Symbol
  Gm36876
• Name
  predicted gene, 36876

• Feature Type
  lncRNA gene
• IDs
  MGI:5596035
  NCBI Gene: 102640929
• Alliance
  gene page
• Transcription Start Sites
  5 TSS

Location &
Maps

• Sequence Map
  Chr11:108871565-108925609 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1610 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5596035	lncRNA gene	Chr11:108871565-108925609 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  2
• Gene trapped
  2
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  3
• RefSeq
  1

• NCBI Gene
  102640929

Representative Sequences			Length	Strain/Species
genomic	102640929	NCBI Gene Model | MGI Sequence Detail	54045	C57BL/6J
transcript	XR_389100	RefSeq | MGI Sequence Detail	3364	C57BL/6J

References

• Summaries
  All 4

  Phenotypes 2
• Earliest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm36876:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr105627	Chr11:108902541-108902581 (+)	30,996 bp
Tssr105628	Chr11:108902641-108902652 (+)	31,082 bp
Tssr105629	Chr11:108902657-108902685 (+)	31,106 bp
Tssr105630	Chr11:108902695-108902732 (+)	31,149 bp
Tssr105631	Chr11:108902812-108902820 (+)	31,251 bp