Dxz4 Gene Detail

Summary

• Symbol
  Dxz4
• Name
  Dxz4 macrosatellite
• Synonyms
  A130080L05Rik

• Feature Type
  lncRNA gene
• IDs
  MGI:5609147
  NCBI Gene: 74396
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  ChrX:74769064-74808305 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 38.29 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  682 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1921646	lncRNA gene	ChrX:74750538-74808347 (-)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Dxz4
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype from 1 allele in 1 genetic background
  1 phenotype from multigenic genotypes
  3 phenotype references
  

• All Mutations and Alleles
  3
• Endonuclease-mediated
  2
• Gene trapped
  1
• Find Mice (IMSR)
  2 strains or lines available

Mice homozygous for a null allele are viable and fertile with no defect in random or imprinted XCI.

Gene Ontology
(GO)
Classifications

Expression

• cDNA Data
  7

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  94
• RefSeq
  1

• Ensembl
  ENSMUSG00000087396 (Evidence)
• NCBI Gene
  74396

Representative Sequences			Length	Strain/Species
genomic	74396	NCBI Gene Model | MGI Sequence Detail	39242	C57BL/6J
transcript	NR_029443	RefSeq | MGI Sequence Detail	3376	ZRU/MplStud

Molecular
Reagents

• All nucleic 7

  cDNA 7

Other
Accession IDs

MGI:1921646, MGI:2442249

References

• Summaries
  All 14

  Phenotypes 3
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:361876 Hasenbein TP, et al., X-linked deletion of Crossfirre, Firre, and Dxz4 in vivo uncovers diverse phenotypes and combinatorial effects on autosomes. Nat Commun. 2024 Dec 5;15(1):10631

TSS for Dxz4:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr163671	ChrX:74808268-74808314 (-)	14 bp
Tssr163670	ChrX:74808242-74808260 (-)	54 bp