Gm36965 Pseudogene Detail

Summary

• Symbol
  Gm36965
• Name
  predicted gene, 36965

• Feature Type
  pseudogene
• IDs
  MGI:5610193
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:5688060-5688453 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  130 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5610193	pseudogene	Chr1:5688060-5688453 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0009968	pseudogene	Chr1:2794796-2795189 (-)
A/J	MGP_AJ_G0009949	pseudogene	Chr1:2767619-2768012 (-)
AKR/J	MGP_AKRJ_G0009932	pseudogene	Chr1:2733653-2734046 (-)
BALB/cJ	MGP_BALBcJ_G0009937	pseudogene	Chr1:2649090-2649483 (-)
C3H/HeJ	MGP_C3HHeJ_G0009865	pseudogene	Chr1:2696327-2696720 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0010182	pseudogene	Chr1:2813046-2813439 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0008971	pseudogene	Chr1:2316454-2317094 (-)
CAST/EiJ	MGP_CASTEiJ_G0009721	pseudogene	Chr1:2881687-2882080 (-)
CBA/J	MGP_CBAJ_G0009841	pseudogene	Chr1:2964788-2965181 (-)
DBA/2J	MGP_DBA2J_G0009864	pseudogene	Chr1:2628677-2629064 (-)
FVB/NJ	MGP_FVBNJ_G0009892	pseudogene	Chr1:2590904-2591297 (-)
LP/J	MGP_LPJ_G0009962	pseudogene	Chr1:2856919-2857312 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0009851	pseudogene	Chr1:3157393-3157786 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0010160	pseudogene	Chr1:2698656-2699049 (-)
PWK/PhJ	MGP_PWKPhJ_G0009627	pseudogene	Chr1:2553431-2553824 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0009444	pseudogene	Chr1:2873757-2874149 (-)
WSB/EiJ	MGP_WSBEiJ_G0009784	pseudogene	Chr1:2653106-2653499 (-)

Homology

• Gene Tree
  Gm36965
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000103936 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000103936	Ensembl Gene Model | MGI Sequence Detail	394	C57BL/6J
transcript	ENSMUST00000193797	Ensembl | MGI Sequence Detail	394	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm36965:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr10902	Chr1:5688423-5688434 (-)	24 bp