Gm36995 Gene Detail

Summary

• Symbol
  Gm36995
• Name
  predicted gene, 36995

• Feature Type
  lncRNA gene
• IDs
  MGI:5610223
• Alliance
  gene page
• Transcription Start Sites
  7 TSS

Location &
Maps

• Sequence Map
  ChrX:7424841-7471620 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  879 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5610223	lncRNA gene	ChrX:7424841-7471620 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0015770	unclassified non-coding RNA gene	ChrX:2168720-2216634 (-)
A/J	MGP_AJ_G0015746	unclassified non-coding RNA gene	ChrX:2130162-2178137 (-)
AKR/J	MGP_AKRJ_G0015708	unclassified non-coding RNA gene	ChrX:2233638-2280287 (-)
BALB/cJ	MGP_BALBcJ_G0015707	unclassified non-coding RNA gene	ChrX:2150454-2197933 (-)
C3H/HeJ	MGP_C3HHeJ_G0015527	unclassified non-coding RNA gene	ChrX:2203531-2252315 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0016162	unclassified non-coding RNA gene	ChrX:2245684-2295522 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013885	unclassified non-coding RNA gene	ChrX:1700042-1747088 (-)
CAST/EiJ	MGP_CASTEiJ_G0015082	unclassified non-coding RNA gene	ChrX:2104243-2152422 (-)
CBA/J	MGP_CBAJ_G0015507	unclassified non-coding RNA gene	ChrX:2359522-2408768 (-)
DBA/2J	MGP_DBA2J_G0015605	unclassified non-coding RNA gene	ChrX:2152092-2199934 (-)
FVB/NJ	MGP_FVBNJ_G0015612	unclassified non-coding RNA gene	ChrX:2116551-2163878 (-)
LP/J	MGP_LPJ_G0015687	unclassified non-coding RNA gene	ChrX:2170035-2219617 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015635	unclassified non-coding RNA gene	ChrX:2325439-2373125 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0016205	unclassified non-coding RNA gene	ChrX:2152521-2201320 (-)
PWK/PhJ	MGP_PWKPhJ_G0014865	unclassified non-coding RNA gene	ChrX:2083594-2131829 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0014652	unclassified non-coding RNA gene	ChrX:2122039-2170656 (-)
WSB/EiJ	MGP_WSBEiJ_G0015186	unclassified non-coding RNA gene	ChrX:2155247-2203494 (-)

Homology

• Gene Tree
  Gm36995
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000103436 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000103436	Ensembl Gene Model | MGI Sequence Detail	46780	C57BL/6J
transcript	ENSMUST00000126170	Ensembl | MGI Sequence Detail	5727	Not Applicable

References

• Summaries
  All 2

  Phenotypes 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:141210 Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI), Mouse Gene Trap Data Load from dbGSS. Database Download. 2008;

TSS for Gm36995:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr162804	ChrX:7471613-7471641 (-)	-7 bp
Tssr162803	ChrX:7471559-7471607 (-)	37 bp
Tssr162802	ChrX:7461681-7461689 (-)	9,935 bp
Tssr162801	ChrX:7461449-7461458 (-)	10,166 bp
Tssr162800	ChrX:7461291-7461303 (-)	10,323 bp
Tssr162799	ChrX:7450289-7450298 (-)	21,326 bp
Tssr162798	ChrX:7450172-7450194 (-)	21,437 bp