Gm37004 Gene Detail

Summary

• Symbol
  Gm37004
• Name
  predicted gene, 37004

• Feature Type
  lncRNA gene
• IDs
  MGI:5610232
  NCBI Gene: 115489463
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr2:78802933-78842098 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1031 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5610232	lncRNA gene	Chr2:78802933-78929195 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0001040	unclassified gene	Chr2:79473123-79616454 (+)
A/J	MGP_AJ_G0001020	unclassified gene	Chr2:76418082-76543531 (+)
AKR/J	MGP_AKRJ_G0001005	unclassified gene	Chr2:78416290-78548573 (+)
BALB/cJ	MGP_BALBcJ_G0001012	unclassified gene	Chr2:76548187-76675708 (+)
C3H/HeJ	MGP_C3HHeJ_G0000994	unclassified gene	Chr2:78636638-78769031 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0001126	unclassified gene	Chr2:81820446-81974289 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0000979	unclassified gene	Chr2:79061329-79190713 (+)
CBA/J	MGP_CBAJ_G0000986	unclassified gene	Chr2:84766582-84904034 (+)
DBA/2J	MGP_DBA2J_G0000990	unclassified gene	Chr2:75968620-76098707 (+)
FVB/NJ	MGP_FVBNJ_G0001000	unclassified gene	Chr2:75344034-75470290 (+)
LP/J	MGP_LPJ_G0001044	unclassified gene	Chr2:79353535-79476705 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0000990	unclassified gene	Chr2:86631483-86776027 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0001118	unclassified gene	Chr2:78582037-78715814 (+)
PWK/PhJ	no annotation
SPRET/EiJ	MGP_SPRETEiJ_G0000910	unclassified gene	Chr2:78850889-78978350 (+)
WSB/EiJ	MGP_WSBEiJ_G0000992	unclassified gene	Chr2:79197100-79333219 (+)

Homology

• Gene Tree
  Gm37004
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19
• RefSeq
  1

• Ensembl
  ENSMUSG00000102286 (Evidence)
• NCBI Gene
  115489463

Representative Sequences			Length	Strain/Species
genomic	115489463	NCBI Gene Model | MGI Sequence Detail	39166	C57BL/6J
transcript	XR_003953863	RefSeq | MGI Sequence Detail	358	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm37004:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr18534	Chr2:78803072-78803081 (+)	144 bp