Gm37168 Gene Detail

Summary

• Symbol
  Gm37168
• Name
  predicted gene, 37168

• Feature Type
  lncRNA gene
• IDs
  MGI:5610396
  NCBI Gene: 102634085
• Alliance
  gene page
• Transcription Start Sites
  16 TSS

Location &
Maps

• Sequence Map
  Chr1:190999301-191025888 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  937 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5610396	lncRNA gene	Chr1:190999301-191025888 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0005086	lincRNA gene	Chr1:198299888-198322505 (+)
A/J	MGP_AJ_G0005069	lincRNA gene	Chr1:190170907-190193033 (+)
AKR/J	MGP_AKRJ_G0005047	lincRNA gene	Chr1:195816970-195838510 (+)
BALB/cJ	MGP_BALBcJ_G0005050	lincRNA gene	Chr1:190849154-190871075 (+)
C3H/HeJ	MGP_C3HHeJ_G0004999	lincRNA gene	Chr1:196655590-196679285 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0005200	lincRNA gene	Chr1:204615941-204637885 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004607	lincRNA gene	Chr1:181066808-181088351 (+)
CAST/EiJ	MGP_CASTEiJ_G0004946	lincRNA gene	Chr1:196258240-196280967 (+)
CBA/J	MGP_CBAJ_G0004989	lincRNA gene	Chr1:212197578-212219168 (+)
DBA/2J	MGP_DBA2J_G0005008	lincRNA gene	Chr1:188895720-188919972 (+)
FVB/NJ	MGP_FVBNJ_G0005029	lincRNA gene	Chr1:187021507-187043732 (+)
LP/J	MGP_LPJ_G0005087	lincRNA gene	Chr1:199475959-199500178 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0005012	lincRNA gene	Chr1:218901705-218926321 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0005207	lincRNA gene	Chr1:195685769-195707739 (+)
PWK/PhJ	MGP_PWKPhJ_G0004897	lincRNA gene	Chr1:188181700-188204137 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0004822	lincRNA gene	Chr1:194693874-194715451 (+)
WSB/EiJ	MGP_WSBEiJ_G0004993	lincRNA gene	Chr1:195904042-195927795 (+)

Homology

• Gene Tree
  Gm37168
  

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22

• Ensembl
  ENSMUSG00000103174 (Evidence)
• NCBI Gene
  102634085

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000103174	Ensembl Gene Model | MGI Sequence Detail	26588	C57BL/6J
transcript	ENSMUST00000246071	Ensembl | MGI Sequence Detail	2073	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm37168:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr10750	Chr1:190999010-190999033 (+)	-279 bp
Tssr10751	Chr1:190999051-190999082 (+)	-234 bp
Tssr10752	Chr1:190999083-190999124 (+)	-197 bp
Tssr10753	Chr1:190999201-190999213 (+)	-94 bp
Tssr10754	Chr1:190999249-190999258 (+)	-47 bp
Tssr10755	Chr1:190999274-190999288 (+)	-20 bp
Tssr10756	Chr1:190999322-190999334 (+)	27 bp
Tssr10757	Chr1:191004809-191004814 (+)	5,511 bp
Tssr10758	Chr1:191008028-191008037 (+)	8,732 bp
Tssr10759	Chr1:191008149-191008156 (+)	8,852 bp
Tssr10760	Chr1:191013611-191013614 (+)	14,312 bp
Tssr10761	Chr1:191013620-191013634 (+)	14,326 bp
Tssr10762	Chr1:191013650-191013661 (+)	14,355 bp
Tssr10763	Chr1:191013664-191013676 (+)	14,369 bp
Tssr10764	Chr1:191013694-191013699 (+)	14,396 bp
Tssr10765	Chr1:191022912-191022947 (+)	23,629 bp