Gm37339 Pseudogene Detail

Summary

• Symbol
  Gm37339
• Name
  predicted gene, 37339

• Feature Type
  pseudogene
• IDs
  MGI:5610567
  NCBI Gene: 112841593
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:183152417-183152808 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  121 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5610567	pseudogene	Chr1:183152361-183152829 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0010464	pseudogene	Chr1:190024474-190024865 (+)
A/J	MGP_AJ_G0010453	pseudogene	Chr1:182261686-182262077 (+)
AKR/J	MGP_AKRJ_G0010422	pseudogene	Chr1:187684415-187684806 (+)
BALB/cJ	MGP_BALBcJ_G0010429	pseudogene	Chr1:182902688-182903079 (+)
C3H/HeJ	MGP_C3HHeJ_G0010359	pseudogene	Chr1:188479642-188480033 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0010701	pseudogene	Chr1:196119283-196119674 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0009376	pseudogene	Chr1:173315119-173315511 (+)
CAST/EiJ	MGP_CASTEiJ_G0010179	pseudogene	Chr1:187868536-187868928 (+)
CBA/J	MGP_CBAJ_G0010325	pseudogene	Chr1:203429241-203429632 (+)
DBA/2J	MGP_DBA2J_G0010357	pseudogene	Chr1:181043574-181043965 (+)
FVB/NJ	MGP_FVBNJ_G0010381	pseudogene	Chr1:179175975-179176366 (+)
LP/J	MGP_LPJ_G0010446	pseudogene	Chr1:191210721-191211112 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0010344	pseudogene	Chr1:210369141-210369532 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0010672	pseudogene	Chr1:187506374-187506766 (+)
PWK/PhJ	MGP_PWKPhJ_G0010081	pseudogene	Chr1:180245985-180246376 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0009895	pseudogene	Chr1:186471115-186471506 (+)
WSB/EiJ	MGP_WSBEiJ_G0010250	pseudogene	Chr1:187683855-187684246 (+)

Homology

• Gene Tree
  Gm37339
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000103415 (Evidence)
• NCBI Gene
  112841593

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000103415	Ensembl Gene Model | MGI Sequence Detail	392	C57BL/6J
transcript	ENSMUST00000194142	Ensembl | MGI Sequence Detail	392	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm37339:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr354	Chr1:183151138-183151159 (+)	-1,268 bp