Gm37406 Gene Detail

Summary

• Symbol
  Gm37406
• Name
  predicted gene, 37406

• Feature Type
  lncRNA gene
• IDs
  MGI:5610634
  NCBI Gene: 105244029
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:180889640-180892040 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  143 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5610634	lncRNA gene	Chr1:180889635-180892040 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0005051	lincRNA gene	Chr1:187555138-187557545 (+)
A/J	MGP_AJ_G0005033	lincRNA gene	Chr1:179961836-179964245 (+)
AKR/J	MGP_AKRJ_G0005011	lincRNA gene	Chr1:185302108-185305575 (+)
BALB/cJ	MGP_BALBcJ_G0005015	lincRNA gene	Chr1:180596466-180598884 (+)
C3H/HeJ	MGP_C3HHeJ_G0004963	lincRNA gene	Chr1:186090543-186093632 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0005164	lincRNA gene	Chr1:193647314-193649719 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0004910	lincRNA gene	Chr1:185433431-185437003 (+)
CBA/J	MGP_CBAJ_G0004954	lincRNA gene	Chr1:200775717-200778123 (+)
DBA/2J	MGP_DBA2J_G0004973	lincRNA gene	Chr1:178788761-178791170 (+)
FVB/NJ	MGP_FVBNJ_G0004994	lincRNA gene	Chr1:176888112-176890537 (+)
LP/J	MGP_LPJ_G0005051	lincRNA gene	Chr1:188805033-188807434 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004978	lincRNA gene	Chr1:207937360-207942640 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0005170	lincRNA gene	Chr1:185084549-185087012 (+)
PWK/PhJ	MGP_PWKPhJ_G0004862	lincRNA gene	Chr1:177909198-177911645 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0004787	lincRNA gene	Chr1:184052509-184054910 (+)
WSB/EiJ	MGP_WSBEiJ_G0004957	lincRNA gene	Chr1:185291345-185293747 (+)

Homology

• Gene Tree
  Gm37406
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  2
• Genomic Mutations
  2 involving Gm37406
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  2

• Ensembl
  ENSMUSG00000103328 (Evidence)
• NCBI Gene
  105244029

Representative Sequences			Length	Strain/Species
genomic	105244029	NCBI Gene Model | MGI Sequence Detail	2401	C57BL/6J
transcript	NR_168314	RefSeq | MGI Sequence Detail	495	ZRU/MplStud

References

• Summaries
  All 5

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm37406:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr10513	Chr1:180889623-180889640 (+)	-8 bp