Gm37422 Gene Detail

Summary

• Symbol
  Gm37422
• Name
  predicted gene, 37422

• Feature Type
  lncRNA gene
• IDs
  MGI:5610650
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr1:189612132-189616849 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  266 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5610650	lncRNA gene	Chr1:189612132-189616849 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0002821	antisense lncRNA gene	Chr1:196816301-196821018 (+)
A/J	MGP_AJ_G0002798	antisense lncRNA gene	Chr1:188758199-188762916 (+)
AKR/J	MGP_AKRJ_G0002779	antisense lncRNA gene	Chr1:194325064-194329781 (+)
BALB/cJ	MGP_BALBcJ_G0002785	antisense lncRNA gene	Chr1:189433505-189438167 (+)
C3H/HeJ	MGP_C3HHeJ_G0002743	antisense lncRNA gene	Chr1:195192758-195197475 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0002927	antisense lncRNA gene	Chr1:203098136-203102853 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002474	antisense lncRNA gene	Chr1:179684306-179688882 (+)
CAST/EiJ	MGP_CASTEiJ_G0002715	antisense lncRNA gene	Chr1:194757064-194761801 (+)
CBA/J	MGP_CBAJ_G0002738	antisense lncRNA gene	Chr1:210666203-210670866 (+)
DBA/2J	MGP_DBA2J_G0002745	antisense lncRNA gene	Chr1:187498931-187503594 (+)
FVB/NJ	MGP_FVBNJ_G0002765	antisense lncRNA gene	Chr1:185612807-185617469 (+)
LP/J	MGP_LPJ_G0002821	antisense lncRNA gene	Chr1:197989844-197994561 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0002755	antisense lncRNA gene	Chr1:217374667-217379384 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0002932	antisense lncRNA gene	Chr1:194243212-194247929 (+)
PWK/PhJ	MGP_PWKPhJ_G0002673	antisense lncRNA gene	Chr1:186759911-186764574 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0002623	antisense lncRNA gene	Chr1:193206504-193211220 (+)
WSB/EiJ	MGP_WSBEiJ_G0002744	antisense lncRNA gene	Chr1:194437634-194442323 (+)

Homology

• Gene Tree
  Gm37422
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000104435 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000104435	Ensembl Gene Model | MGI Sequence Detail	4718	C57BL/6J
transcript	ENSMUST00000193794	Ensembl | MGI Sequence Detail	4718	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm37422:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr10698	Chr1:189612100-189612107 (+)	-28 bp
Tssr10699	Chr1:189612126-189612138 (+)	0 bp