Gm37885 Gene Detail

Summary

• Symbol
  Gm37885
• Name
  predicted gene, 37885

• Feature Type
  lncRNA gene
• IDs
  MGI:5611113
  NCBI Gene: 108167751
• Alliance
  gene page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr1:182311744-182320038 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  359 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5611113	lncRNA gene	Chr1:182311744-182322989 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0002808	antisense lncRNA gene	Chr1:189115738-189125390 (+)
A/J	MGP_AJ_G0002785	antisense lncRNA gene	Chr1:181407335-181415754 (+)
AKR/J	MGP_AKRJ_G0002766	antisense lncRNA gene	Chr1:186782605-186790875 (+)
BALB/cJ	MGP_BALBcJ_G0002772	antisense lncRNA gene	Chr1:182040479-182048975 (+)
C3H/HeJ	MGP_C3HHeJ_G0002730	antisense lncRNA gene	Chr1:187599267-187608260 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0002914	antisense lncRNA gene	Chr1:195214760-195223009 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002461	antisense lncRNA gene	Chr1:172477661-172486585 (+)
CAST/EiJ	MGP_CASTEiJ_G0002702	antisense lncRNA gene	Chr1:186942792-186951082 (+)
CBA/J	MGP_CBAJ_G0002725	antisense lncRNA gene	Chr1:202459106-202469694 (+)
DBA/2J	MGP_DBA2J_G0002732	antisense lncRNA gene	Chr1:180184494-180192780 (+)
FVB/NJ	MGP_FVBNJ_G0002752	antisense lncRNA gene	Chr1:178321349-178330628 (+)
LP/J	MGP_LPJ_G0002808	antisense lncRNA gene	Chr1:190308232-190317011 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0002742	antisense lncRNA gene	Chr1:209465429-209475363 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0002919	antisense lncRNA gene	Chr1:186610774-186620530 (+)
PWK/PhJ	MGP_PWKPhJ_G0002660	antisense lncRNA gene	Chr1:179373506-179382254 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0002610	antisense lncRNA gene	Chr1:185570737-185579211 (+)
WSB/EiJ	MGP_WSBEiJ_G0002731	antisense lncRNA gene	Chr1:186804527-186814341 (+)

Homology

• Gene Tree
  Gm37885
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  2

• Ensembl
  ENSMUSG00000102234 (Evidence)
• NCBI Gene
  108167751

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000102234	Ensembl Gene Model | MGI Sequence Detail	8295	C57BL/6J
transcript	ENSMUST00000192568	Ensembl | MGI Sequence Detail	1391	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm37885:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr10561	Chr1:182311760-182311777 (+)	25 bp
Tssr10562	Chr1:182311790-182311806 (+)	54 bp
Tssr10563	Chr1:182317586-182317600 (+)	5,849 bp