Gm37982 Gene Detail

Summary

• Symbol
  Gm37982
• Name
  predicted gene, 37982

• Feature Type
  lncRNA gene
• IDs
  MGI:5611210
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:167070026-167079061 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  449 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5611210	lncRNA gene	Chr1:167070026-167079061 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0002787	antisense lncRNA gene	Chr1:172791808-172802344 (+)
A/J	MGP_AJ_G0002763	antisense lncRNA gene	Chr1:165746326-165755349 (+)
AKR/J	MGP_AKRJ_G0002744	antisense lncRNA gene	Chr1:170760410-170769437 (+)
BALB/cJ	MGP_BALBcJ_G0002750	antisense lncRNA gene	Chr1:166229449-166238936 (+)
C3H/HeJ	MGP_C3HHeJ_G0002708	antisense lncRNA gene	Chr1:170988458-170997477 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0002893	antisense lncRNA gene	Chr1:178585597-178598447 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002440	antisense lncRNA gene	Chr1:157595759-157604875 (+)
CAST/EiJ	MGP_CASTEiJ_G0002681	antisense lncRNA gene	Chr1:170596657-170607290 (+)
CBA/J	MGP_CBAJ_G0002704	antisense lncRNA gene	Chr1:184919773-184928802 (+)
DBA/2J	MGP_DBA2J_G0002710	antisense lncRNA gene	Chr1:164593615-164603050 (+)
FVB/NJ	MGP_FVBNJ_G0002730	antisense lncRNA gene	Chr1:163037044-163051132 (+)
LP/J	MGP_LPJ_G0002788	antisense lncRNA gene	Chr1:173872588-173882535 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0002720	antisense lncRNA gene	Chr1:192301801-192315323 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0002897	antisense lncRNA gene	Chr1:170630939-170639899 (+)
PWK/PhJ	MGP_PWKPhJ_G0002638	antisense lncRNA gene	Chr1:163797890-163806959 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0002589	antisense lncRNA gene	Chr1:169401003-169411226 (+)
WSB/EiJ	MGP_WSBEiJ_G0002710	antisense lncRNA gene	Chr1:170721900-170730960 (+)

Homology

• Gene Tree
  Gm37982
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  2
• Genomic Mutations
  2 involving Gm37982
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000103139 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000103139	Ensembl Gene Model | MGI Sequence Detail	9036	C57BL/6J
transcript	ENSMUST00000193076	Ensembl | MGI Sequence Detail	561	Not Applicable

References

• Summaries
  All 3

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm37982:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr9884	Chr1:167069978-167069992 (+)	-41 bp