Gm37988 Gene Detail

Summary

• Symbol
  Gm37988
• Name
  predicted gene, 37988

• Feature Type
  protein coding gene
• IDs
  MGI:5611216
• Alliance
  gene page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr1:4878115-4956993 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  2254 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5611216	protein coding gene	Chr1:4878115-4956993 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015812	protein coding gene	Chr1:1845057-1926650 (+)
A/J	MGP_AJ_G0015794	protein coding gene	Chr1:1921801-2004711 (+)
AKR/J	MGP_AKRJ_G0015753	protein coding gene	Chr1:1904350-1988523 (+)
BALB/cJ	MGP_BALBcJ_G0015750	protein coding gene	Chr1:1850424-1932095 (+)
C3H/HeJ	MGP_C3HHeJ_G0015584	protein coding gene	Chr1:1881431-1964836 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0016202	protein coding gene	Chr1:1945043-2040954 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013924	protein coding gene	Chr1:1603873-1668226 (+)
CAST/EiJ	MGP_CASTEiJ_G0015164	protein coding gene	Chr1:2058742-2146828 (+)
CBA/J	MGP_CBAJ_G0015558	protein coding gene	Chr1:2065581-2157476 (+)
DBA/2J	MGP_DBA2J_G0015656	protein coding gene	Chr1:1833854-1913319 (+)
FVB/NJ	MGP_FVBNJ_G0015661	protein coding gene	Chr1:1802064-1882418 (+)
LP/J	MGP_LPJ_G0015729	protein coding gene	Chr1:2023151-2109157 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015680	protein coding gene	Chr1:2223553-2317750 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0016249	protein coding gene	Chr1:1859022-1947438 (+)
PWK/PhJ	MGP_PWKPhJ_G0014948	protein coding gene	Chr1:1762995-1845610 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014728	protein coding gene	Chr1:2035117-2121926 (+)
WSB/EiJ	MGP_WSBEiJ_G0015228	protein coding gene	Chr1:1863178-1947896 (+)

Homology

• Gene Tree
  Gm37988
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  6
• Gene trapped
  6
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• UniProt
  1

• Ensembl
  ENSMUSG00000104217 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000104217	Ensembl Gene Model | MGI Sequence Detail	78879	C57BL/6J
transcript	ENSMUST00000155020	Ensembl | MGI Sequence Detail	825	Not Applicable
polypeptide	ENSMUSP00000136108	Ensembl | MGI Sequence Detail	62	Not Applicable

Protein
Information

• UniProt
  1 Sequence

References

• Summaries
  All 5

  Phenotypes 3
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm37988:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr5802	Chr1:4878089-4878151 (+)	5 bp
Tssr5803	Chr1:4878469-4878510 (+)	375 bp
Tssr5804	Chr1:4898798-4898839 (+)	20,704 bp