Gm38040 Pseudogene Detail

Summary

• Symbol
  Gm38040
• Name
  predicted gene, 38040

• Feature Type
  pseudogene
• IDs
  MGI:5611268
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr3:92972047-92972271 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  141 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5611268	pseudogene	Chr3:92972047-92972271 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0040311	pseudogene	Chr3:93542993-93543217 (-)
A/J	MGP_AJ_G0040296	pseudogene	Chr3:90625356-90625580 (-)
AKR/J	MGP_AKRJ_G0040237	pseudogene	Chr3:92726821-92727045 (-)
BALB/cJ	MGP_BALBcJ_G0040295	pseudogene	Chr3:90408518-90408742 (-)
C3H/HeJ	MGP_C3HHeJ_G0039928	pseudogene	Chr3:92940646-92940870 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0040884	pseudogene	Chr3:97103789-97104013 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0037310	pseudogene	Chr3:87227898-87228123 (-)
CAST/EiJ	MGP_CASTEiJ_G0039013	pseudogene	Chr3:92403122-92403346 (-)
CBA/J	MGP_CBAJ_G0039894	pseudogene	Chr3:100443670-100443894 (-)
DBA/2J	MGP_DBA2J_G0040093	pseudogene	Chr3:89942757-89942981 (-)
FVB/NJ	MGP_FVBNJ_G0040048	pseudogene	Chr3:88077572-88077796 (-)
LP/J	MGP_LPJ_G0040143	pseudogene	Chr3:94780503-94780727 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0040045	pseudogene	Chr3:106729484-106729708 (-)
NZO/HlLtJ	no annotation
PWK/PhJ	MGP_PWKPhJ_G0038703	pseudogene	Chr3:89817544-89817769 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0038397	pseudogene	Chr3:90814998-90815223 (-)
WSB/EiJ	MGP_WSBEiJ_G0039239	pseudogene	Chr3:92842382-92842606 (-)

Homology

• Gene Tree
  Gm38040
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm38040
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19

• Ensembl
  ENSMUSG00000104298 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000104298	Ensembl Gene Model | MGI Sequence Detail	225	C57BL/6J
transcript	ENSMUST00000193505	Ensembl | MGI Sequence Detail	225	Not Applicable

References

• Summaries
  All 5

  Diseases 1

  Phenotypes 4
• Earliest
  J:70677 Cook SA, et al., Mouse paracentric inversion In(3)55Rk mutates the urate oxidase gene. Cytogenet Cell Genet. 2001;93(1-2):77-82
• Latest
  J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426