Gm38096 Gene Detail

Summary

• Symbol
  Gm38096
• Name
  predicted gene, 38096

• Feature Type
  lncRNA gene
• IDs
  MGI:5611324
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr3:83310709-83313097 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  187 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5611324	lncRNA gene	Chr3:83310709-83313097 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0006225	lincRNA gene	Chr3:83241489-83243862 (+)
A/J	MGP_AJ_G0006217	lincRNA gene	Chr3:80509319-80511700 (+)
AKR/J	MGP_AKRJ_G0006193	lincRNA gene	Chr3:82393931-82396307 (+)
BALB/cJ	MGP_BALBcJ_G0006193	lincRNA gene	Chr3:80578465-80580841 (+)
C3H/HeJ	MGP_C3HHeJ_G0006143	lincRNA gene	Chr3:82687702-82690083 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0006357	lincRNA gene	Chr3:86362439-86364831 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005662	lincRNA gene	Chr3:76190349-76192698 (+)
CAST/EiJ	MGP_CASTEiJ_G0006077	lincRNA gene	Chr3:82868666-82871053 (+)
CBA/J	MGP_CBAJ_G0006128	lincRNA gene	Chr3:89279019-89281400 (+)
DBA/2J	MGP_DBA2J_G0006147	lincRNA gene	Chr3:80032079-80034455 (+)
FVB/NJ	MGP_FVBNJ_G0006171	lincRNA gene	Chr3:78315329-78317705 (+)
LP/J	MGP_LPJ_G0006230	lincRNA gene	Chr3:84216559-84218932 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0006161	lincRNA gene	Chr3:95671575-95673956 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0006361	lincRNA gene	Chr3:82207703-82210072 (+)
PWK/PhJ	MGP_PWKPhJ_G0006022	lincRNA gene	Chr3:79787553-79789932 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0005929	lincRNA gene	Chr3:81375250-81377638 (+)
WSB/EiJ	MGP_WSBEiJ_G0006124	lincRNA gene	Chr3:82539732-82542110 (+)

Homology

• Gene Tree
  Gm38096
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm38096
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000103459 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000103459	Ensembl Gene Model | MGI Sequence Detail	2389	C57BL/6J
transcript	ENSMUST00000193692	Ensembl | MGI Sequence Detail	2389	Not Applicable

References

• Summaries
  All 3

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;