Gm38132 Gene Detail

Summary

• Symbol
  Gm38132
• Name
  predicted gene, 38132

• Feature Type
  lncRNA gene
• IDs
  MGI:5611360
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr3:52093994-52095378 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  173 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5611360	lncRNA gene	Chr3:52093994-52095378 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015505	unclassified non-coding RNA gene	Chr3:50701199-50702583 (+)
A/J	MGP_AJ_G0015481	unclassified non-coding RNA gene	Chr3:49212424-49213808 (+)
AKR/J	MGP_AKRJ_G0015445	unclassified non-coding RNA gene	Chr3:50182646-50184030 (+)
BALB/cJ	MGP_BALBcJ_G0015444	unclassified non-coding RNA gene	Chr3:49071121-49072505 (+)
C3H/HeJ	MGP_C3HHeJ_G0015267	unclassified non-coding RNA gene	Chr3:50413086-50414470 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0015898	unclassified non-coding RNA gene	Chr3:52720642-52722026 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013635	unclassified non-coding RNA gene	Chr3:45827815-45829208 (+)
CAST/EiJ	MGP_CASTEiJ_G0014820	unclassified non-coding RNA gene	Chr3:50493109-50494489 (+)
CBA/J	MGP_CBAJ_G0015248	unclassified non-coding RNA gene	Chr3:54364531-54365915 (+)
DBA/2J	MGP_DBA2J_G0015342	unclassified non-coding RNA gene	Chr3:48810784-48812168 (+)
FVB/NJ	MGP_FVBNJ_G0015349	unclassified non-coding RNA gene	Chr3:47790754-47792138 (+)
LP/J	MGP_LPJ_G0015420	unclassified non-coding RNA gene	Chr3:51457137-51458521 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015373	unclassified non-coding RNA gene	Chr3:58527089-58528473 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015939	unclassified non-coding RNA gene	Chr3:50115997-50117381 (+)
PWK/PhJ	MGP_PWKPhJ_G0014608	unclassified non-coding RNA gene	Chr3:48474508-48475888 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014396	unclassified non-coding RNA gene	Chr3:49776949-49778373 (+)
WSB/EiJ	MGP_WSBEiJ_G0014927	unclassified non-coding RNA gene	Chr3:50219887-50221271 (+)

Homology

• Gene Tree
  Gm38132
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  1
• Radiation induced
  1
• Genomic Mutations
  1 involving Gm38132
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000104055 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000104055	Ensembl Gene Model | MGI Sequence Detail	1385	C57BL/6J
transcript	ENSMUST00000195251	Ensembl | MGI Sequence Detail	752	Not Applicable

References

• Summaries
  All 6

  Phenotypes 5
• Earliest
  J:64276 Lyon MF, et al., Dose-response curves for radiation-induced gene mutations in mouse oocytes and their interpretation. Mutat Res. 1979 Nov;63(1):161-73
• Latest
  J:157707 Puligilla C, et al., Sox2 induces neuronal formation in the developing mammalian cochlea. J Neurosci. 2010 Jan 13;30(2):714-22

TSS for Gm38132:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr29088	Chr3:52094004-52094023 (+)	20 bp