Gm38140 Gene Detail

Summary

• Symbol
  Gm38140
• Name
  predicted gene, 38140

• Feature Type
  unclassified gene
• IDs
  MGI:5611368
• Alliance
  gene page
• Transcription Start Sites
  5 TSS

Location &
Maps

• Sequence Map
  Chr1:134024143-134026897 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  189 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5611368	unclassified gene	Chr1:134024143-134026897 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0000599	unclassified gene	Chr1:137742330-137745084 (-)
A/J	MGP_AJ_G0000573	unclassified gene	Chr1:132560969-132563723 (-)
AKR/J	MGP_AKRJ_G0000562	unclassified gene	Chr1:136517430-136520184 (-)
BALB/cJ	MGP_BALBcJ_G0000565	unclassified gene	Chr1:132894163-132896917 (-)
C3H/HeJ	MGP_C3HHeJ_G0000552	unclassified gene	Chr1:136610975-136613729 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0000682	unclassified gene	Chr1:142768643-142771397 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0000428	unclassified gene	Chr1:125704969-125707717 (-)
CAST/EiJ	MGP_CASTEiJ_G0000546	unclassified gene	Chr1:135660864-135663613 (-)
CBA/J	MGP_CBAJ_G0000543	unclassified gene	Chr1:147681232-147683986 (-)
DBA/2J	MGP_DBA2J_G0000547	unclassified gene	Chr1:131572613-131575367 (-)
FVB/NJ	MGP_FVBNJ_G0000561	unclassified gene	Chr1:130199974-130202728 (-)
LP/J	MGP_LPJ_G0000605	unclassified gene	Chr1:139013304-139016058 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0000556	unclassified gene	Chr1:153407528-153410282 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0000674	unclassified gene	Chr1:136236536-136239292 (-)
PWK/PhJ	MGP_PWKPhJ_G0000498	unclassified gene	Chr1:130589188-130591974 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0000474	unclassified gene	Chr1:135208894-135211651 (-)
WSB/EiJ	MGP_WSBEiJ_G0000550	unclassified gene	Chr1:136265613-136268367 (-)

Homology

• Gene Tree
  Gm38140
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19

• Ensembl
  ENSMUSG00000102380 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000102380	Ensembl Gene Model | MGI Sequence Detail	2755	C57BL/6J

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm38140:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr13776	Chr1:134026992-134027032 (-)	-115 bp
Tssr13775	Chr1:134026931-134026942 (-)	-40 bp
Tssr13774	Chr1:134026887-134026898 (-)	4 bp
Tssr13773	Chr1:134026876-134026883 (-)	17 bp
Tssr13772	Chr1:134026858-134026867 (-)	34 bp