Gm38171 Gene Detail

Summary

• Symbol
  Gm38171
• Name
  predicted gene, 38171

• Feature Type
  lncRNA gene
• IDs
  MGI:5611399
  NCBI Gene: 118568498
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr2:11320183-11324685 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  231 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5611399	lncRNA gene	Chr2:11320183-11338972 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0005866	lincRNA gene	Chr2:8707364-8711858 (-)
A/J	MGP_AJ_G0005858	lincRNA gene	Chr2:8347301-8351783 (-)
AKR/J	MGP_AKRJ_G0005833	lincRNA gene	Chr2:8636886-8641358 (-)
BALB/cJ	MGP_BALBcJ_G0005837	lincRNA gene	Chr2:8327126-8331612 (-)
C3H/HeJ	MGP_C3HHeJ_G0005784	lincRNA gene	Chr2:8558529-8563050 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0005997	lincRNA gene	Chr2:8958755-8963245 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005334	lincRNA gene	Chr2:7795516-7799769 (-)
CAST/EiJ	MGP_CASTEiJ_G0005721	lincRNA gene	Chr2:8583646-8587945 (-)
CBA/J	MGP_CBAJ_G0005769	lincRNA gene	Chr2:9303440-9307938 (-)
DBA/2J	MGP_DBA2J_G0005790	lincRNA gene	Chr2:8268214-8272712 (-)
FVB/NJ	MGP_FVBNJ_G0005816	lincRNA gene	Chr2:8192649-8197070 (-)
LP/J	MGP_LPJ_G0005870	lincRNA gene	Chr2:8630447-8634953 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0005803	lincRNA gene	Chr2:9222087-9226581 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0005994	lincRNA gene	Chr2:8566150-8570656 (-)
PWK/PhJ	MGP_PWKPhJ_G0005670	lincRNA gene	Chr2:8224846-8229521 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0005583	lincRNA gene	Chr2:8547162-8551869 (-)
WSB/EiJ	MGP_WSBEiJ_G0005774	lincRNA gene	Chr2:8639965-8644401 (-)

Homology

• Gene Tree
  Gm38171
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  2

• Ensembl
  ENSMUSG00000102196 (Evidence)
• NCBI Gene
  118568498

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000102196	Ensembl Gene Model | MGI Sequence Detail	4503	C57BL/6J
transcript	ENSMUST00000195716	Ensembl | MGI Sequence Detail	478	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;