Gm38300 Gene Detail

Summary

• Symbol
  Gm38300
• Name
  predicted gene, 38300

• Feature Type
  unclassified gene
• IDs
  MGI:5611528
• Alliance
  gene page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr1:178167166-178169035 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  78 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5611528	unclassified gene	Chr1:178167166-178169035 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0000721	unclassified gene	Chr1:184626946-184628815 (+)
A/J	MGP_AJ_G0000697	unclassified gene	Chr1:177199926-177201796 (+)
AKR/J	MGP_AKRJ_G0000686	unclassified gene	Chr1:182482200-182484072 (+)
BALB/cJ	MGP_BALBcJ_G0000689	unclassified gene	Chr1:177833587-177835456 (+)
C3H/HeJ	MGP_C3HHeJ_G0000675	unclassified gene	Chr1:183214186-183216055 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0000805	unclassified gene	Chr1:190630268-190632137 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0000542	unclassified gene	Chr1:168209789-168213570 (+)
CAST/EiJ	MGP_CASTEiJ_G0000666	unclassified gene	Chr1:182499665-182501537 (+)
CBA/J	MGP_CBAJ_G0000665	unclassified gene	Chr1:197721767-197723636 (+)
DBA/2J	MGP_DBA2J_G0000670	unclassified gene	Chr1:176057404-176059273 (+)
FVB/NJ	MGP_FVBNJ_G0000682	unclassified gene	Chr1:174134962-174136831 (+)
LP/J	MGP_LPJ_G0000727	unclassified gene	Chr1:185903321-185905190 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0000674	unclassified gene	Chr1:204895678-204897547 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0000798	unclassified gene	Chr1:182197794-182199663 (+)
PWK/PhJ	MGP_PWKPhJ_G0000619	unclassified gene	Chr1:175112394-175114486 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0000593	unclassified gene	Chr1:181151580-181154364 (+)
WSB/EiJ	MGP_WSBEiJ_G0000673	unclassified gene	Chr1:182419099-182420969 (+)

Homology

• Gene Tree
  Gm38300
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  4
• Gene trapped
  4
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19

• Ensembl
  ENSMUSG00000104279 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000104279	Ensembl Gene Model | MGI Sequence Detail	1870	C57BL/6J

References

• Summaries
  All 4

  Phenotypes 3
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm38300:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr10389	Chr1:178165435-178165467 (+)	-1,715 bp
Tssr10390	Chr1:178165536-178165552 (+)	-1,622 bp
Tssr10391	Chr1:178165759-178165763 (+)	-1,405 bp