Gm38421 Pseudogene Detail

Summary

• Symbol
  Gm38421
• Name
  predicted gene, 38421

• Feature Type
  pseudogene
• IDs
  MGI:5621306
  NCBI Gene: 100418104
• Alliance
  gene page
• Transcription Start Sites
  5 TSS

Location &
Maps

• Sequence Map
  Chr1:87983133-87984062 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  121 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5621306	pseudogene	Chr1:87983133-87984062 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm38421
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  3
• RefSeq
  1

• NCBI Gene
  100418104

Representative Sequences			Length	Strain/Species
genomic	100418104	NCBI Gene Model | MGI Sequence Detail	930	C57BL/6J

References

• Summaries
  All 6

  Phenotypes 4
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:7938 Juriloff DM, et al., Genetic and developmental studies of a new mouse mutation that produces otocephaly. J Craniofac Genet Dev Biol. 1985;5(2):121-45

TSS for Gm38421:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr7922	Chr1:87983099-87983171 (+)	2 bp
Tssr7923	Chr1:87983177-87983188 (+)	50 bp
Tssr7924	Chr1:87983189-87983200 (+)	62 bp
Tssr7925	Chr1:87983212-87983217 (+)	82 bp
Tssr7926	Chr1:87983236-87983241 (+)	106 bp