Cistr Gene Detail

Summary

• Symbol
  Cistr
• Name
  chondrogenesis associated transcript
• Synonyms
  Gm38436

• Feature Type
  lncRNA gene
• IDs
  MGI:5621321
  NCBI Gene: 102216269
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr15:102654876-102655344 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  98 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5621321	lncRNA gene	Chr15:102654876-102655344 (-)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Human Ortholog
  CISTR, chondrogenesis-associated transcript

• Vertebrate Orthologs
  1

Vertebrate Orthology Source

Alliance of Genome Resources

• Human Ortholog
  CISTR, chondrogenesis-associated transcript
  
• Synonyms
  CISTR-ACT, CISTRACT, re52431
• Links
  HGNC:49426

  NCBI Gene ID: 102216268

  
  
• Chr Location
  12q13.13; chr12:53746337-53757227 (-)  GRCh38

---

• MGI Vertebrate Homology
  Cistr stringent orthology
  1 human;1 mouse
  
• HCOP
  vertebrate homology predictions: CISTR

Expression

• Other Mouse Links
  GEO

Sequences &
Gene Models

• All Sequences
  6
• RefSeq
  1

• NCBI Gene
  102216269

Representative Sequences			Length	Strain/Species
genomic	102216269	NCBI Gene Model | MGI Sequence Detail	469	C57BL/6J
transcript	NR_104334	RefSeq | MGI Sequence Detail	469	ZRU/MplStud

Other
Accession IDs

MGI:6297111

References

• Summaries
  All 4
• Earliest
  J:340232 Maass PG, et al., A misplaced lncRNA causes brachydactyly in humans. J Clin Invest. 2012 Nov;122(11):3990-4002