Gm38456 Gene Detail

Summary

• Symbol
  Gm38456
• Name
  predicted gene, 38456

• Feature Type
  lncRNA gene
• IDs
  MGI:5621341
  NCBI Gene: 102633938
• Alliance
  gene page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr16:24089588-24114983 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  754 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5621341	lncRNA gene	Chr16:24089588-24114983 (-)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Expression

• cDNA Data
  1

Sequences &
Gene Models

• All Sequences
  10
• RefSeq
  7

• NCBI Gene
  102633938

Representative Sequences			Length	Strain/Species
genomic	102633938	NCBI Gene Model | MGI Sequence Detail	25396	C57BL/6J
transcript	AK139628	GenBank | ENA | DDBJ | MGI Sequence Detail	2761	C57BL/6J

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:90438 Mouse Genome Informatics Scientific Curators, Obtaining and loading genome assembly coordinates from NCBI annotations. 2005;

TSS for Gm38456:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr140594	Chr16:24114971-24114981 (-)	7 bp
Tssr140593	Chr16:24114950-24114961 (-)	27 bp
Tssr140592	Chr16:24114923-24114936 (-)	53 bp