Gm38469 Gene Detail

Summary

• Symbol
  Gm38469
• Name
  predicted gene, 38469

• Feature Type
  protein coding gene
• IDs
  MGI:5621354
  NCBI Gene: 102634841
• Alliance
  gene page
• Transcription Start Sites
  7 TSS

Location &
Maps

• Sequence Map
  Chr15:96032698-96185141 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  4828 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5621354	protein coding gene	Chr15:96032698-96185141 (-)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  9
• Chemically induced (other)
  1
• Gene trapped
  8
• Genomic Mutations
  1 involving Gm38469
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  8
• RefSeq
  6

• NCBI Gene
  102634841

Representative Sequences			Length	Strain/Species
genomic	102634841	NCBI Gene Model | MGI Sequence Detail	152444	C57BL/6J
transcript	XM_011245785	RefSeq | MGI Sequence Detail	2077	C57BL/6J
polypeptide	XP_036015582	RefSeq | MGI Sequence Detail	247	C57BL/6J

References

• Summaries
  All 6

  Phenotypes 4
• Earliest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm38469:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr136023	Chr15:96183766-96183781 (-)	1,367 bp
Tssr136022	Chr15:96183590-96183613 (-)	1,539 bp
Tssr136021	Chr15:96183372-96183420 (-)	1,745 bp
Tssr136019	Chr15:96161931-96161934 (-)	23,208 bp
Tssr136018	Chr15:96108745-96108757 (-)	76,390 bp
Tssr136017	Chr15:96102586-96102595 (-)	82,550 bp
Tssr136016	Chr15:96102562-96102573 (-)	82,573 bp