Gm38500 Gene Detail

Summary

• Symbol
  Gm38500
• Name
  predicted gene, 38500

• Feature Type
  lncRNA gene
• IDs
  MGI:5621385
  NCBI Gene: 102637719
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr10:120037495-120040073 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  221 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5621385	lncRNA gene	Chr10:120037495-120040073 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm38500
• Find Mice (IMSR)
  0 strains or lines available

Expression

• cDNA Data
  3

Sequences &
Gene Models

• All Sequences
  6
• RefSeq
  2

• NCBI Gene
  102637719

Representative Sequences			Length	Strain/Species
genomic	102637719	NCBI Gene Model | MGI Sequence Detail	2579	C57BL/6J
transcript	NR_166660	RefSeq | MGI Sequence Detail	1770	ZRU/MplStud

Molecular
Reagents

• All nucleic 3

  cDNA 3

References

• Summaries
  All 9

  Phenotypes 5
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:74548 Benson KF, et al., Molecular Characterization of the Mouse In(10)17Rk Inversion and Identification of a Novel Muscle-Specific Gene at the Proximal Breakpoint. Genetics. 2002 Jan;160(1):279-87

TSS for Gm38500:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr95985	Chr10:120037491-120037565 (+)	33 bp