Gm38619 Gene Detail

Summary

• Symbol
  Gm38619
• Name
  predicted gene, 38619

• Feature Type
  lncRNA gene
• IDs
  MGI:5621504
  NCBI Gene: 102642616
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr16:12522238-12529459 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  296 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5621504	lncRNA gene	Chr16:12522232-12529459 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Expression

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  7
• RefSeq
  1

• Ensembl
  ENSMUSG00000115968 (Evidence), ENSMUSG00000116197 (Evidence)
• NCBI Gene
  102642616

Representative Sequences			Length	Strain/Species
genomic	102642616	NCBI Gene Model | MGI Sequence Detail	7222	C57BL/6J
transcript	XR_875918	RefSeq | MGI Sequence Detail	712	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm38619:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr137118	Chr16:12522263-12522280 (+)	34 bp