Gm38832 Gene Detail

Summary

• Symbol
  Gm38832
• Name
  predicted gene, 38832
• Synonyms
  Gm45050

• Feature Type
  lncRNA gene
• IDs
  MGI:5621717
  NCBI Gene: 105242682
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr6:72139833-72144691 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  232 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5621717	lncRNA gene	Chr6:72139833-72144691 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0006989	lincRNA gene	Chr6:72687437-72692295 (+)
A/J	MGP_AJ_G0006985	lincRNA gene	Chr6:69882291-69887149 (+)
AKR/J	MGP_AKRJ_G0006953	lincRNA gene	Chr6:71926701-71931542 (+)
BALB/cJ	MGP_BALBcJ_G0006961	lincRNA gene	Chr6:69909915-69914773 (+)
C3H/HeJ	MGP_C3HHeJ_G0006964	lincRNA gene	Chr6:112301073-112305929 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0007124	lincRNA gene	Chr6:74609967-74614825 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006365	lincRNA gene	Chr6:69028331-69033106 (+)
CAST/EiJ	MGP_CASTEiJ_G0006819	lincRNA gene	Chr6:71785572-71790395 (+)
CBA/J	MGP_CBAJ_G0006886	lincRNA gene	Chr6:77625823-77630679 (+)
DBA/2J	MGP_DBA2J_G0006906	lincRNA gene	Chr6:69279024-69283880 (+)
FVB/NJ	MGP_FVBNJ_G0006930	lincRNA gene	Chr6:68646593-68651451 (+)
LP/J	MGP_LPJ_G0006990	lincRNA gene	Chr6:72604034-72608892 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0006910	lincRNA gene	Chr6:81042174-81047015 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0007129	lincRNA gene	Chr6:71739682-71744540 (+)
PWK/PhJ	MGP_PWKPhJ_G0006758	lincRNA gene	Chr6:68175957-68180806 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0006668	lincRNA gene	Chr6:70473929-70478784 (+)
WSB/EiJ	MGP_WSBEiJ_G0006875	lincRNA gene	Chr6:72108465-72113330 (+)

Homology

• Gene Tree
  Gm38832
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000108371 (Evidence)
• NCBI Gene
  105242682

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000108371	Ensembl Gene Model | MGI Sequence Detail	4859	C57BL/6J
transcript	ENSMUST00000205674	Ensembl | MGI Sequence Detail	400	Not Applicable

Other
Accession IDs

MGI:5753626

References

• Summaries
  All 5
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm38832:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr57075	Chr6:72139790-72139821 (+)	-27 bp