Gm38942 Gene Detail

Summary

• Symbol
  Gm38942
• Name
  predicted gene, 38942

• Feature Type
  lncRNA gene
• IDs
  MGI:5621827
  NCBI Gene: 105242845
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr11:86750563-86760625 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  332 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5621827	lncRNA gene	Chr11:86750563-86760625 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Gene trapped
  1
• Genomic Mutations
  1 involving Gm38942
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  8
• RefSeq
  6

• NCBI Gene
  105242845

Representative Sequences			Length	Strain/Species
genomic	105242845	NCBI Gene Model | MGI Sequence Detail	10063	C57BL/6J
transcript	XR_003949751	RefSeq | MGI Sequence Detail	1464	C57BL/6J

References

• Summaries
  All 6

  Phenotypes 4
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6

TSS for Gm38942:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr103900	Chr11:86751267-86751296 (+)	719 bp