Gm38976 Gene Detail

Summary

• Symbol
  Gm38976
• Name
  predicted gene, 38976

• Feature Type
  lncRNA gene
• IDs
  MGI:5621861
  NCBI Gene: 105242892
• Alliance
  gene page
• Transcription Start Sites
  17 TSS

Location &
Maps

• Sequence Map
  Chr7:27820690-27847927 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  706 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5621861	lncRNA gene	Chr7:27820690-27847927 (-)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Sequences &
Gene Models

• All Sequences
  4
• RefSeq
  2

• NCBI Gene
  105242892

Representative Sequences			Length	Strain/Species
genomic	105242892	NCBI Gene Model | MGI Sequence Detail	27238	C57BL/6J
transcript	XR_004934275	RefSeq | MGI Sequence Detail	1290	C57BL/6J

References

• Summaries
  All 2
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:90438 Mouse Genome Informatics Scientific Curators, Obtaining and loading genome assembly coordinates from NCBI annotations. 2005;

TSS for Gm38976:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr71459	Chr7:27846271-27846282 (-)	1,650 bp
Tssr71458	Chr7:27846236-27846258 (-)	1,680 bp
Tssr71457	Chr7:27841672-27841683 (-)	6,249 bp
Tssr71456	Chr7:27839606-27839617 (-)	8,315 bp
Tssr71455	Chr7:27839552-27839561 (-)	8,370 bp
Tssr71454	Chr7:27839241-27839261 (-)	8,676 bp
Tssr71453	Chr7:27839214-27839228 (-)	8,706 bp
Tssr71452	Chr7:27839191-27839208 (-)	8,727 bp
Tssr71451	Chr7:27836943-27836964 (-)	10,973 bp
Tssr71450	Chr7:27836550-27836557 (-)	11,373 bp
Tssr71449	Chr7:27836533-27836545 (-)	11,388 bp
Tssr71448	Chr7:27836523-27836532 (-)	11,399 bp
Tssr71447	Chr7:27831176-27831193 (-)	16,742 bp
Tssr2158	Chr7:27831118-27831125 (-)	16,805 bp
Tssr71446	Chr7:27831089-27831094 (-)	16,835 bp
Tssr2157	Chr7:27831017-27831024 (-)	16,906 bp
Tssr71445	Chr7:27828745-27828753 (-)	19,178 bp