Gm39001 Gene Detail

Summary

• Symbol
  Gm39001
• Name
  predicted gene, 39001

• Feature Type
  lncRNA gene
• IDs
  MGI:5621886
  NCBI Gene: 105242929
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr7:44023921-44025327 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  127 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5621886	lncRNA gene	Chr7:44023921-44025327 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  7
• Gene trapped
  7
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  3
• RefSeq
  1

• NCBI Gene
  105242929

Representative Sequences			Length	Strain/Species
genomic	105242929	NCBI Gene Model | MGI Sequence Detail	1407	C57BL/6J
transcript	XR_882056	RefSeq | MGI Sequence Detail	453	C57BL/6J

References

• Summaries
  All 4

  Phenotypes 2
• Earliest
  J:152068 Friedel RH, et al., EUCOMM--the European conditional mouse mutagenesis program. Brief Funct Genomic Proteomic. 2007 Sep;6(3):180-5

TSS for Gm39001:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr66146	Chr7:44023729-44023740 (+)	-186 bp