Gm39425 Gene Detail

Summary

• Symbol
  Gm39425
• Name
  predicted gene, 39425

• Feature Type
  lncRNA gene
• IDs
  MGI:5622310
  NCBI Gene: 105243532
• Alliance
  gene page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr11:107080260-107096665 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  589 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5622310	lncRNA gene	Chr11:107080260-107096665 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  3
• RefSeq
  1

• NCBI Gene
  105243532

Representative Sequences			Length	Strain/Species
genomic	105243532	NCBI Gene Model | MGI Sequence Detail	16406	C57BL/6J
transcript	XR_880257	RefSeq | MGI Sequence Detail	444	C57BL/6J

References

• Summaries
  All 3

  Phenotypes 1
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:141210 Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI), Mouse Gene Trap Data Load from dbGSS. Database Download. 2008;

TSS for Gm39425:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr105569	Chr11:107080257-107080268 (+)	3 bp
Tssr105570	Chr11:107092742-107092756 (+)	12,489 bp
Tssr105571	Chr11:107092798-107092809 (+)	12,544 bp