Gm39503 Gene Detail

Summary

• Symbol
  Gm39503
• Name
  predicted gene, 39503

• Feature Type
  lncRNA gene
• IDs
  MGI:5622388
  NCBI Gene: 105243672
• Alliance
  gene page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  ChrX:36420914-36451698 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  567 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5622388	lncRNA gene	ChrX:36420914-36451698 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Sequences &
Gene Models

• All Sequences
  3
• RefSeq
  1

• NCBI Gene
  105243672

Representative Sequences			Length	Strain/Species
genomic	105243672	NCBI Gene Model | MGI Sequence Detail	30785	C57BL/6J
transcript	XR_882286	RefSeq | MGI Sequence Detail	12637	C57BL/6J

References

• Summaries
  All 2
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:90438 Mouse Genome Informatics Scientific Curators, Obtaining and loading genome assembly coordinates from NCBI annotations. 2005;

TSS for Gm39503:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr160765	ChrX:36436094-36436102 (+)	15,184 bp
Tssr160766	ChrX:36441832-36441834 (+)	20,919 bp
Tssr160767	ChrX:36443251-36443260 (+)	22,342 bp