Gm39529 Gene Detail

Summary

• Symbol
  Gm39529
• Name
  predicted gene, 39529

• Feature Type
  lncRNA gene
• IDs
  MGI:5622414
  NCBI Gene: 105243712
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  ChrX:102067702-102070871 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  100 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5622414	lncRNA gene	ChrX:102067627-102070872 (-)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm39529
  

Sequences &
Gene Models

• All Sequences
  6
• RefSeq
  2

• Ensembl
  ENSMUSG00000120909 (Evidence)
• NCBI Gene
  105243712

Representative Sequences			Length	Strain/Species
genomic	105243712	NCBI Gene Model | MGI Sequence Detail	3170	C57BL/6J
transcript	NR_166892	RefSeq | MGI Sequence Detail	1988	ZRU/MplStud

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm39529:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr163924	ChrX:102070865-102070873 (-)	2 bp