Gm39546 Gene Detail

Summary

• Symbol
  Gm39546
• Name
  predicted gene, 39546

• Feature Type
  lncRNA gene
• IDs
  MGI:5622431
  NCBI Gene: 105243738
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  ChrX:158290545-158299559 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  290 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5622431	lncRNA gene	ChrX:158290545-158299559 (-)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  40
• Gene trapped
  40
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  3
• RefSeq
  1

• NCBI Gene
  105243738

Representative Sequences			Length	Strain/Species
genomic	105243738	NCBI Gene Model | MGI Sequence Detail	9015	C57BL/6J
transcript	XR_878290	RefSeq | MGI Sequence Detail	700	C57BL/6J

References

• Summaries
  All 7

  Phenotypes 5
• Earliest
  J:85162 Hansen J, et al., A large-scale, gene-driven mutagenesis approach for the functional analysis of the mouse genome. Proc Natl Acad Sci U S A. 2003 Aug 19;100(17):9918-22
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm39546:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr5714	ChrX:158291841-158291859 (-)	7,709 bp