Gm39608 Gene Detail

Summary

• Symbol
  Gm39608
• Name
  predicted gene, 39608

• Feature Type
  lncRNA gene
• IDs
  MGI:5622493
  NCBI Gene: 105243883
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr11:20844561-20848744 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  253 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5622493	lncRNA gene	Chr11:20844561-20848744 (-)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm39608
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  3
• RefSeq
  1

• NCBI Gene
  105243883

Representative Sequences			Length	Strain/Species
genomic	105243883	NCBI Gene Model | MGI Sequence Detail	4184	C57BL/6J
transcript	XR_872289	RefSeq | MGI Sequence Detail	2660	C57BL/6J

References

• Summaries
  All 5

  Phenotypes 3
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6

TSS for Gm39608:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr107054	Chr11:20848726-20848743 (-)	9 bp
Tssr107053	Chr11:20848685-20848693 (-)	55 bp