Gm39821 Gene Detail

Summary

• Symbol
  Gm39821
• Name
  predicted gene, 39821

• Feature Type
  lncRNA gene
• IDs
  MGI:5622706
  NCBI Gene: 105244161
• Alliance
  gene page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr11:51774856-51779868 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  242 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5622706	lncRNA gene	Chr11:51774856-51779868 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Gene trapped
  1
• Genomic Mutations
  1 involving Gm39821
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  4
• RefSeq
  2

• NCBI Gene
  105244161

Representative Sequences			Length	Strain/Species
genomic	105244161	NCBI Gene Model | MGI Sequence Detail	5013	C57BL/6J
transcript	XR_003949673	RefSeq | MGI Sequence Detail	649	C57BL/6J

References

• Summaries
  All 7

  Phenotypes 5
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14

TSS for Gm39821:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr101293	Chr11:51774834-51774841 (+)	-18 bp
Tssr101294	Chr11:51774900-51774948 (+)	68 bp
Tssr101295	Chr11:51774966-51774974 (+)	114 bp
Tssr101296	Chr11:51775092-51775111 (+)	246 bp