Gm40016 Gene Detail

Summary

• Symbol
  Gm40016
• Name
  predicted gene, 40016

• Feature Type
  lncRNA gene
• IDs
  MGI:5622901
  NCBI Gene: 105244400
• Alliance
  gene page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr11:63340041-63354889 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  652 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5622901	lncRNA gene	Chr11:63340041-63354889 (-)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  1
• Gene trapped
  3
• Genomic Mutations
  1 involving Gm40016
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  5
• RefSeq
  3

• NCBI Gene
  105244400

Representative Sequences			Length	Strain/Species
genomic	105244400	NCBI Gene Model | MGI Sequence Detail	14849	C57BL/6J
transcript	XR_879921	RefSeq | MGI Sequence Detail	1437	C57BL/6J

References

• Summaries
  All 7

  Phenotypes 5
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm40016:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr108448	Chr11:63354905-63354940 (-)	-34 bp
Tssr108447	Chr11:63354781-63354800 (-)	98 bp
Tssr108446	Chr11:63354747-63354758 (-)	136 bp