Gm40245 Gene Detail

Summary

• Symbol
  Gm40245
• Name
  predicted gene, 40245

• Feature Type
  lncRNA gene
• IDs
  MGI:5623130
  NCBI Gene: 105244683
• Alliance
  gene page
• Transcription Start Sites
  5 TSS

Location &
Maps

• Sequence Map
  Chr4:125043836-125080845 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1124 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5623130	lncRNA gene	Chr4:125043836-125080845 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Radiation induced
  1
• Genomic Mutations
  3 involving Gm40245
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  5
• RefSeq
  3

• NCBI Gene
  105244683

Representative Sequences			Length	Strain/Species
genomic	105244683	NCBI Gene Model | MGI Sequence Detail	37010	C57BL/6J
transcript	XR_868135	RefSeq | MGI Sequence Detail	3149	C57BL/6J

References

• Summaries
  All 5

  Phenotypes 3
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:90438 Mouse Genome Informatics Scientific Curators, Obtaining and loading genome assembly coordinates from NCBI annotations. 2005;

TSS for Gm40245:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr38940	Chr4:125044583-125044610 (+)	761 bp
Tssr38941	Chr4:125052078-125052113 (+)	8,260 bp
Tssr38942	Chr4:125070314-125070334 (+)	26,488 bp
Tssr38943	Chr4:125070344-125070354 (+)	26,513 bp
Tssr38944	Chr4:125070364-125070391 (+)	26,542 bp