Gm40348 Gene Detail

Summary

• Symbol
  Gm40348
• Name
  predicted gene, 40348
• Synonyms
  Gm42562

• Feature Type
  lncRNA gene
• IDs
  MGI:5623233
  NCBI Gene: 105244802
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr5:137203203-137209406 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  256 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5623233	lncRNA gene	Chr5:137199192-137209688 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0006835	lincRNA gene	Chr5:141921394-141932061 (+)
A/J	MGP_AJ_G0006829	lincRNA gene	Chr5:135745756-135753295 (+)
AKR/J	MGP_AKRJ_G0006799	lincRNA gene	Chr5:140148134-140157480 (+)
BALB/cJ	MGP_BALBcJ_G0006805	lincRNA gene	Chr5:137117264-137123796 (+)
C3H/HeJ	MGP_C3HHeJ_G0006750	lincRNA gene	Chr5:140802969-140810152 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0006969	lincRNA gene	Chr5:147174164-147181874 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006222	lincRNA gene	Chr5:130008992-130015437 (+)
CAST/EiJ	MGP_CASTEiJ_G0006672	lincRNA gene	Chr5:140199784-140212647 (+)
CBA/J	MGP_CBAJ_G0006732	lincRNA gene	Chr5:152970974-152988115 (+)
DBA/2J	MGP_DBA2J_G0006752	lincRNA gene	Chr5:135660266-135666592 (+)
FVB/NJ	MGP_FVBNJ_G0006776	lincRNA gene	Chr5:134838006-134844146 (+)
LP/J	MGP_LPJ_G0006836	lincRNA gene	Chr5:142351207-142366070 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0006759	lincRNA gene	Chr5:155853770-155861760 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0006972	lincRNA gene	Chr5:139994751-140003181 (+)
PWK/PhJ	MGP_PWKPhJ_G0006612	lincRNA gene	Chr5:134741570-134748412 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0006518	lincRNA gene	Chr5:137569484-137575636 (+)
WSB/EiJ	MGP_WSBEiJ_G0006723	lincRNA gene	Chr5:140725781-140732539 (+)

Homology

• Gene Tree
  Gm40348
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  3

• Ensembl
  ENSMUSG00000106466 (Evidence)
• NCBI Gene
  105244802

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000106466	Ensembl Gene Model | MGI Sequence Detail	6204	C57BL/6J
transcript	ENSMUST00000199648	Ensembl | MGI Sequence Detail	452	Not Applicable

Other
Accession IDs

MGI:5662699

References

• Summaries
  All 5
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;